Biyoinformatik Veri Tabanlarını ve Yazılımlarını detaylı olarak listeleme çalışmalarını yapmaktayız. URL adresleri üzerinden kolaylıkla istediğiniz veri tabanına ve yazılıma ulaşabilirsiniz. Liste sürekli güncellenecektir ve açıklamalar da eklenecektir.
| Veri Tabanları ve Yazılımlar |
|---|
| Kitaplar |
| Essentials of Bioinformatics Volume I |
| Essentials of Bioinformatics Volume II |
| Essentials of Bioinformatics Volume III |
| Bioinformatics A Student’s Companion |
| Bioinformatics for Beginners |
| Gene Cloning and DNA Analysis: An Introduction |
| Bioinformatics and the Cell |
| Introduction to Biotechnology |
| Bioinformatics Data Skills |
| Introduction to Bioinformatics |
| DİZİ KAYNAKLARI |
| NCBI |
| EBI |
| UniProt |
| GenBank |
| EMBL |
| DNA data Bank of Japan |
| Ensembl |
| GeneCards |
| Nucleic acid database |
| DNA |
| Allele Frequency Net Database |
| Database of single nucleotide polymorphisms |
| Database of essential genes |
| European Genome-phenome Archive |
| EUGene |
| JASPAR |
| Japanese Genotype-phenotype Archive |
| NCBI Reference Sequence Database |
| PolymiRTS |
| 1000 Genomes |
| UCSC Genome Browser |
| The Eukaryotic Promoter Database (EPD) |
| TRANSFAC |
| ENCODE |
| HapMap |
| Array Express |
| The Human Gene Mutation Database |
| The Personal Genome Project |
| SNPedia |
| ExoCarta |
| CAP3 |
| Staden paketi—Gap4/Gap5 |
| Phrap |
| VERİ TABANI ARAMA |
| 2013 NAR Veri tabanlarının alfabetik listesi |
| NCBI BLAST |
| NCBI BLAST+ (EBI) |
| UniProt BLAST |
| Dot Plot ANALİZİ |
| Dotlet |
| Jdotter |
| YASS |
| İKİLİ HİZALAMA |
| BLAST2Seq |
| EBI |
| LALIGN |
| ÇOKLU DİZİ HİZALAMA (MSA) |
| EBI |
| PRALINE |
| MUSCLE |
| MAFFT |
| GGSEARCH |
| HMMER |
| G-PAS |
| EMBOSS Needle |
| NW-align |
| MUMmer |
| MCALIGN2 |
| NW-align |
| STRETCHER |
| Matcher |
| SAM |
| SWIMM |
| ALLALIGN |
| SWIPE |
| MSA GÖRÜNTÜLEME |
| Boxshade |
| ESPript |
| Expasy |
| DNA MARKER ANALİZİ |
| Ntedit |
| NTSYSpc |
| DARwin 5 |
| PowerMarker |
| FİLOGENETİK ANALİZ |
| MEGA |
| PYHLIP |
| PAUP |
| Filogenetik analiz yazılımları koleksiyonu |
| TreeFam |
| NGPhylogenyFR |
| PRİMER TASARIMI |
| PRIMER3 |
| Gene Fisher |
| Web Primer |
| PCR Designer |
| Primo Pro 3.4 |
| EPRIMER3 |
| PrimerQuest |
| MethPrimer |
| MEDUSA |
| Eurofins genomics |
| Primer plus3 |
| Genscript |
| BiSearch |
| Primer-BLAST |
| Primer design-M |
| Primer Designer Tool |
| MFEprimer |
| Primer4 clades |
| Flexi® Vector Primer Design Tool |
| primerx |
| Quant prime |
| RESTRİKSİYON ANALİZİ |
| NEBCutter |
| GEN TAHMİNİ |
| BLASTX |
| ORFFinder |
| FGENESB |
| PROTEİN |
| Eukaryotic Kinase and Phosphatase Database |
| Human Protein Reference Database |
| PROTEİN YAPISI KARŞILAŞTIRMA |
| ModBase |
| Protein Data Bank |
| PDBe |
| PROTEİN AİLELERİ |
| Pfam |
| Protein Information Resource |
| POST TRANSLASYONEL MODİFİKASYONLAR |
| SysPTM |
| Ubiquitin and Ubiquitin-like Conjugation Database |
| CATH |
| Compendium of Protein Lysine Modifications |
| Database of Interacting Proteins |
| POST TRANSLASYONEL MODİFİKASYONLAR |
| PTM-SD |
| PRIDE |
| Human Protein Atlas |
| DisProt |
| BioGRID |
| NextProt |
| PROTEİN BİRİNCİL YAPISI |
| ProtParam |
| PROTEİN İKİNCİL YAPISI |
| SOPMA |
| PSIPRED |
| InterPro |
| Jpred |
| Porter |
| SPIDER3 |
| SSPro |
| HOMOLOJİ MODELLEMESİ |
| Swiss model |
| MODELLER |
| Hhpred |
| RaptorX |
| Protein Model Portal |
| ROBETTA |
| FoldX |
| ESyPred3D |
| PROTEİN ÜÇÜNCÜL YAPISI |
| RAMPAGE |
| PROCHECK |
| SAVeS |
| THREADING |
| I-TASSER |
| pGenTHREADER |
| GenTHREADER |
| IntFOLD |
| Sparks X |
| FUGUE2 |
| AB INITIO YÖNTEM |
| FALCON |
| QUARK |
| PROTEİN YAPISI GÖRSELLEŞTİRME |
| RASMOL |
| PyMOL |
| RNA FRABASE |
| NPIDB |
| PROCHECK |
| ERRAT |
| WHAT_CHECK |
| Verify3D |
| ProSA web |
| WHAT_IF |
| MolProbity |
| The Protein Model Portal |
| SAVES |
| PROTEİN YAPISI HİZALAMA |
| SuperPose |
| VAST |
| TM-align |
| MATRAS |
| PROTEİN YARIK (CLEFT) ANALİZİ |
| PDBsum |
| MOLEKÜLER KENETLENME (DOCKING) |
| AutoDock4.1 |
| MGLTools |
| ClusPro2.0 |
| sc-PDB |
| FlexX |
| GOLD |
| METABOLİK AĞLAR |
| Reactome |
| STRING |
| MINT |
| BioGRID |
| Int Act |
| KEGG |
| BioCyc |
| Ingenuity Pathways Knowledge Base (IPKB) |
| Netpath |
| WikiPathways |
| İpath |
| BioCarta |
| HumanCyc |
| The Human Protein Reference Database |
| BRENDA |
| TRANSPATH |
| MetaCyc |
| METABOLOMİK |
| COSMOS |
| ISA framework |
| The Human Metabolome Database (HMDB) |
| METLIN |
| XCMS |
| MetaboLights Database |
| COLMAR |
| Fragment iDentificator |
| MeltDB |
| MetaboAnalyst |
| MetaboMiner |
| MVAPACK |
| TRANSMEMBRAN ANALİZİ |
| MEMSAT |
| MemProtMD |
| PDBTM |
| SİNYAL PEPTİDİ TESPİTİ |
| SignalP |
| Phobius |
| HÜCRE ALTI YERLEŞİM |
| TargetP |
| RNA ANALİZLERİ |
| Mfold |
| RNAFold |
| Spectral Repeat Finder |
| YAPISAL BİYOLOJİ VERİ TABANLARI VE YAZILIMLARI |
| THGS: a web based database of transmembrane helices in genome sequences |
| PSST: protein sequence search tool |
| CSSP: consensus secondary structure prediction |
| FAIR |
| PDBj |
| Biological Magnetic Resonance Data Bank |
| Pictorial analysis of macromolecular structures |
| DALI |
| Vector Alignment Search Tool, |
| CE |
| DOMINE |
| SUPERFAMILY |
| EĞİTSEL KAYNAKLAR |
| Train online—European Bioinformatics Institute |
| MIT libraries |
| Online lectures on bioinformatics |
| Digital world biology |
| NIH library |
| Network science |
| ÖZEL VERİTABANLARI |
| The Arabidopsis Information Resource (TAIR) |
| FlyBase |
| Glycan Fragment Database (GFDB) |
| SaccharomycesGenome Database |
| PomBase |
| Xenbase |
| ZFIN |
| TAIR |
| Candida Genome Database |
| dictyBase database |
| Rat Genome Database |
| Mouse Genome Database |
| WormBase |
| EcoCyc |
| miRBase |
| The Bacterial Diversity Metadatabase |
| BioModels Database |
| LİGAND-BAĞLANMA BÖLGESİ-METALOPROTEİNLER |
| MetalPDB |
| KİMYASAL VERİ TABANLARI |
| Chemical Entities of Biological Interest (ChEBI) |
| ChEMBL |
| İLAÇ VERİ TABANLARI |
| DrugBank |
| PharmGKB |
| ChEBI |
| PubChem |
| ZINC Database |
| Crispr VERİTABANLARI |
| CRISPRFinder |
| CRISPRCasFinder |
| PILER -CR |
| CRISPR recognition tool |
| CRISPRDetect |
| CRISPRdisco |
| CRISPRmap |
| CRASS |
| MetaCRISPR |
| CRISPRleader |
| CRISPRtionary |
| CRISPRone |
| Cas-OFFinder |
| E-CRISP |
| CHOPCHOP |
| CRISPR-ERA |
| CRISPOR |
| GuideScan |
| CASPER |
Referanslar:
Ibrahim, K. S., Gurusubramanian, G., Yadav, R. P., Kumar, N. S., Pandian, S. K., Borah, P., & Mohan, S. (2017). Bioinformatics – A Student’s Companion. Springer Singapore.
Shaik, N. Ahmad, Hakeem, K. Rehman, Banaganapalli, B., & Elango, R. 2019. Essentials of Bioinformatics, Volume I: Understanding Bioinformatics: Genes to Proteins. 1st ed..
